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Table 2 Results for over-representation analysis in 33 experiments

From: A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes

Experiment Name. TF default parameter setting Con. Most significantly over-representation
   Up-regulated genes Down-regulated genes Parameter setting status
E-GEOD-10954 cMyc N S 400, down-regulated, 10000 bp S
E-GEOD-11352 ESRalpha S N 100, up-regulated, 4000 bp S
E-GEOD-11809 irf1 S W 100, up-regulated, 4000 bp S
E-GEOD-3126 HNF4a S N 400, up-regulated, 4000 bp S
E-GEOD-6077 nmyc S N 100, up-regulated, 7000 bp S
E-GEOD-6487 Myf S N 400, up-regulated, 4000 bp S
E-GEOD-7219 NFkappaB2 S N 200, up-regulated, 7000 bp S
E-GEOD-7223 AIbZIP S N 200, up-regulated, 4000 bp S
E-GEOD-7835 HiF1 N S 400, up-regulated, 7000 bp S
E-MEXP-1444 Cepba S W 100, up-regulated, 7000 bp S
E-GEOD-2624 NF-kB N S 200 down-regulated, 2000 bp S
E-GEOD-11557 Evi-1 N S 200 down-regulated, 2000 bp S
E-GEOD-5424 Foxa2 W N 300 up-regulated, 7000 bp S
E-TABM-43 TP53 W N 200 up-regulated, 2000 bp S
E-GEOD-3116 HNF4 W N 100 up-regulated, 2000 bp S
E-GEOD-2060 CREB N N 400, up-regulated, 7000 bp S
E-GEOD-3244 p53 N N 100, up-regulated, 7000 bp S
E-GEOD-9786 PPARalpha N N 100, down-regulated, 2000 bp S
E-GEOD-5475 PPARI N N 100 down-regulated, 7000 bp S
E-GEOD-2192 PPARg2 W N 200, up-regulated, 4000 bp W
E-GEOD-11039 e2f2 W N 100, up-regulated, 4000 bp W
E-GEOD-590 USF1 N N 300 up-regulated, 7000 bp W
E-GEOD-5800 Irf6 N N 100 up-regulated, 4000 bp W
E-GEOD-8943 FOXQ1 W N 200 up-regulated, 4000 bp W
E-GEOD-5823 c-MYC W W 300 up-regulated 4000 bp W
E-GEOD-2527 Gata-1 N N - -
E-GEOD-7137 KLF15 N N - -
E-MEXP-634 Gata-3 N N - -
E-GEOD-2815 Myb N N - -
E-GEOD-6846 STAT2 N N - -
E-GEOD-11836 Nkx3.1 N N - -
E-MEXP-871 HMGA2 N N - -
E-MEXP-1413 E2F2 N N - -
  1. S: significantly over-represented; W: weakly over-represented; N: not over-represented