Skip to main content

Advertisement

Table 1 Comparison of AVA and VIP performance (1 sample, 67 amplicons, 12 known variants)

From: Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline

  AVA software VIP pipeline
Total variants (unfiltered) 235 50
'Pass filter' variants 33 14
True variants called 6/12 (50%) 12/12 (100%)
False positives 27/33 (81.2%) 2/14 (14.2%)
False negatives 6/12 (50%) 0/12 (0%)