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Table 2 HAT: Motif enrichment analysis using α = 0.05.

From: HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data

Nr Motif Hits Fold Change p-value
1 M00117.CEBPbeta 3236 2.082 6.187E-304
2 M00770.CEBP 6688 1.628 8.947E-299
3 M00912.C-EBP 6609 1.583 6.697E-265
4 M00116.CEBPalpha 5858 1.591 1.121E-239
5 cEBP 4068 1.758 1.875E-238
6 M00190.CEBP 5245 1.592 2.814E-215
7 M00716.ZF5 3927 1.706 2.121E-208
8 M00109.CEBPbeta 2645 1.896 3.059E-195
9 M00098.Pax-2 4355 1.619 1.761E-191
10 M00428.E2F-1 4374 1.572 4.665E-171
  1. The top 10 motifs enriched in the 1910 detected regions-of-interest using HAT (α = 0.05) in the cebpa-study. There is a high enrichment for binding motif CEBP. For each reported motif, the number of hits within the regions-of-interest are counted, their fold change computed, and the p-value derived using the binomial test.