Optimal contact definition for reconstruction of Contact Maps

BMC Bioinformatics

Table 1 RMSD of reconstruction ensembles.

PDB code	SCOP class	Length	Ensemble's average RMSD
1bkrA	all-α	109	1.93
1oddA	all-α	118	2.76
1cemA	all-α	363	1.69
1pzcA	all-β	123	1.52
1onlA	all-β	128	1.67
1eurA	all-β	365	2.49
1e6kA	α/β	130	1.91
1o8wA	α/β	146	1.71
1edeA	α/β	310	1.62
1r9hA	α + β	135	3.11
1ugmA	α + β	125	2.17
1iu4A	α + β	331	3.70

The 12 proteins subset with chain lengths and the average pairwise RMSD of the reconstruction ensembles, based on C_βcontact maps with 8Å cut-off.

ISSN: 1471-2105