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Table 1 Number of DGCr1 clones and assigned fold change for each PCR pool.

From: Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset

pool

name

Number of

clones

Number of assigned

probe sets*

Relative amount

in A

Relative amount

in B

Designated fold

change (A vs B)

1

170

161

1

1.2

0.83

2

192

196

2

1

2.00

3

192

181

1.5

1

1.50

4

192

177

1

2.5

0.40

5

187

176

1

1

1.00

6

116

104

3

1

3.00

7

192

202

3.5

1

3.50

8

192

204

1

1.5

0.67

9

192

204

1

4

0.25

10

192

192

1.7

1

1.70

11a

192

200

1

1

1.00

12a

121

123

1

1

1.00

13a

192

195

1

1

1.00

14a

192

197

1

1

1.00

15a

192

203

1

1

1.00

16a

191

191

1

1

1.00

17a

139

141

1

1

1.00

18a

192

193

1

1

1.00

19a

192

186

1

3.5

0.29

11b

191

197

1

1

1.00

12b

223

225

1

1

1.00

13b

237

246

1

1

1.00

14b

288

302

1

1

1.00

15b

288

303

1

1

1.00

16b

288

292

1

1

1.00

17b

288

300

1

1

1.00

18b

250

243

1

1

1.00

19b

265

274

3.5

1

3.50

  1. *There are 202, 15 and 1 probe sets assigned to clones present in two, three and four different pools respectively.