From: GWAMA: software for genome-wide association meta-analysis
Study | Reported strand | Effect allele1 | Other allele | RAF | Odds ratio (95% confidence interval) | Aligned allelic effect (standard error) | Comment |
---|---|---|---|---|---|---|---|
1 | + | A | G | 0.12 | 1.12 (1.07-1.16) | 0.11 (0.02) | Allele A taken as reference effect allele. |
2 | + | G | A | 0.85 | 0.92 (0.87-0.98) | 0.08 (0.03) | Effect aligned to allele A. |
3 | - | T | C | 0.12 | 1.06 (1.02-1.10) | 0.06 (0.02) | Effect aligned to allele A on + strand. |
4 | + | T | C | 0.13 | 1.07 (0.99-1.16) | 0.07 (0.04) | Effect aligned to allele A on + strand. Strand error reported to log file. |
5 | + | A | G | 0.87 | 0.95 (0.90-1.01) | -0.05 (0.03) | Large discrepancy in EAF reported to log file. |