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Figure 12 | BMC Bioinformatics

Figure 12

From: Washing scaling of GeneChip microarray expression

Figure 12

Washing kinetics of the hook-parameters of the studied three chips before (small symbols) and after (large symbols) re-labeling: The small symbols referring to the first series were re-plotted from Figure 10. The thin dotted lines and the thick lines serve as a guide for the eye to illustrate the trends of the first and second series (chip A), respectively. The respective enrichment factors are given in the right part of the figure (see also Figure 13). The intensity-related parameters Σ(∞,t), Σ(0,t) and O(t) shift to larger values after re-labelling whereas the width of the hook β(t) roughly agrees in both series. The vertical shift between the levels of mean expression φ(t), the mean S/N-ratio <R(t)> and also the PM/MM-gain α(t) reflect the enrichment in the second series as predicted by the simple model illustrated in Figure 13 (the numbers in the right part are the respective enrichment factors, see text).

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