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Table 4 Counts from the accuracy table of the test set.

From: A classification model for distinguishing copy number variants from cancer-related alterations

  CBS smoothed GLAD CBS unsmoothed
  TN FN FP TP TN FN FP TP TN FN FP TP
CART-full model 654 54 182 793 822 145 157 614 613 77 455 1541
RF - full model 659 42 177 805 828 93 151 666 752 124 316 1494
CART- database only 699 120 137 727 804 122 175 637 364 37 704 1581
RF - no database 644 57 192 790 824 91 155 668 686 112 382 1506
RF - one array 647 59 189 788 832 125 147 634 729 120 339 1498
  1. (TN, True Negatives, are true CNAs predicted to be CNAs; FN, False Negatives, are true CNVs predicted to be CNAs; FP, False Positives, are true CNAs predicted to be CNVs; TP, True Positives, are true CNVs predicted to be CNVs)