Skip to main content

Table 2 Normalized distances and insertion costs for three comparisons.

From: Scaffold filling, contig fusion and comparative gene order inference

  without missing homologs missing homologs replaced change
Comparison n D D / n n D D / n Δ n Δ D
Populusb-Vitis [7] 2104 1092 0.52 6144 2545 0.41 4040 1453 0.36
Populusb-Carica [2] 2590 1461 0.56 7222 3466 0.48 4632 2005 0.43
Ricinusc-Vitis 13694 8283 0.60 18300 9931 0.54 4606 1682 0.37
R.-V. corrected a 13694 7715 0.56 18300 9365 0.51 4606 1684 0.37
  1. a: contains corrections to distance due to scaffold fusions. b: Populus comparisons include rearrangements during the re-diploidization of the ancestral tetraploid. c: some missing homologs in the Ricinus comparisons are simply not sequenced, while in the other comparisons, missing homologs are virtually all absent from the genome.