Skip to main content

Table 2 Gene ranking.

From: Prediction of epigenetically regulated genes in breast cancer cell lines

Gene R p-Value
COL1A2 0.888126 0.001200
S100A2 0.770036 0.008100
TFF1 0.764194 0.000000
INHBA 0.761402 0.000400
WNT5A 0.731727 0.002700
GJA1 0.722746 0.000300
GNG11 0.722025 0.000600
GSTM3 0.693819 0.000000
IGFBP5 0.684982 0.000000
IFI16 0.615905 0.002200
FDXR 0.611562 0.000500
CTGF 0.594878 0.000000
NUPR1 0.586186 0.000100
GSTP1 0.560942 0.004200
CYP1B1 0.550128 0.000200
TOP2A 0.522335 0.009000
ESR1 0.518515 0.015700
IFITM3 0.514558 0.002600
MX1 0.503719 0.012400
CDKN2A 0.500448 0.008800
CD44 0.496155 0.034700
MTHFD1 0.494175 0.028900
VAV3 0.481777 0.000800
TFAP2A 0.474620 0.000200
HOXA9 0.473453 0.000000
DHRS2 0.454703 0.009000
CBFA2T3 0.443504 0.021400
ZIC1 0.435035 0.016000
LITAF 0.434958 0.001700
ADAM12 0.428524 0.016000
IFITM2 0.421762 0.019400
EFS 0.412792 0.007300
TACSTD2 0.407764 0.006500
GSTO1 0.390240 0.010400
CGREF1 0.372320 0.000000
MAFB 0.366501 0.011300
CAMK2N1 0.353566 0.008600
SEMA3F 0.348895 0.000000
RAB25 0.347329 0.023900
ANXA13 0.341399 0.012600
ALCAM 0.335584 0.009400
EIF4B 0.328433 0.000000
GATA3 0.328377 0.008500
RAB21 0.321558 0.012700
PTN 0.320676 0.030900
PYCARD 0.319203 0.035600
MAPK13 0.316035 0.013700
IGFBP2 0.315176 0.021300
S100A6 0.310833 0.033000
C12orf24 0.310481 0.020100
IGFBP7 0.309320 0.049000
ALDH4A1 0.302697 0.000000
APITD1 0.296412 0.000000
CRABP2 0.285055 0.048900
ITGB4 0.281394 0.031500
BMP1 0.279983 0.001700
UNG 0.275001 0.000000
FAM134A 0.268202 0.043500
  1. Top 58 genes predicted as epigenetically regulated according to our logistic model and p-value calculation.
  2. Methylation-expression associations for underlined genes are shown in Figure 4.