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Table 2 Gene ranking.

From: Prediction of epigenetically regulated genes in breast cancer cell lines

Gene

R

p-Value

COL1A2

0.888126

0.001200

S100A2

0.770036

0.008100

TFF1

0.764194

0.000000

INHBA

0.761402

0.000400

WNT5A

0.731727

0.002700

GJA1

0.722746

0.000300

GNG11

0.722025

0.000600

GSTM3

0.693819

0.000000

IGFBP5

0.684982

0.000000

IFI16

0.615905

0.002200

FDXR

0.611562

0.000500

CTGF

0.594878

0.000000

NUPR1

0.586186

0.000100

GSTP1

0.560942

0.004200

CYP1B1

0.550128

0.000200

TOP2A

0.522335

0.009000

ESR1

0.518515

0.015700

IFITM3

0.514558

0.002600

MX1

0.503719

0.012400

CDKN2A

0.500448

0.008800

CD44

0.496155

0.034700

MTHFD1

0.494175

0.028900

VAV3

0.481777

0.000800

TFAP2A

0.474620

0.000200

HOXA9

0.473453

0.000000

DHRS2

0.454703

0.009000

CBFA2T3

0.443504

0.021400

ZIC1

0.435035

0.016000

LITAF

0.434958

0.001700

ADAM12

0.428524

0.016000

IFITM2

0.421762

0.019400

EFS

0.412792

0.007300

TACSTD2

0.407764

0.006500

GSTO1

0.390240

0.010400

CGREF1

0.372320

0.000000

MAFB

0.366501

0.011300

CAMK2N1

0.353566

0.008600

SEMA3F

0.348895

0.000000

RAB25

0.347329

0.023900

ANXA13

0.341399

0.012600

ALCAM

0.335584

0.009400

EIF4B

0.328433

0.000000

GATA3

0.328377

0.008500

RAB21

0.321558

0.012700

PTN

0.320676

0.030900

PYCARD

0.319203

0.035600

MAPK13

0.316035

0.013700

IGFBP2

0.315176

0.021300

S100A6

0.310833

0.033000

C12orf24

0.310481

0.020100

IGFBP7

0.309320

0.049000

ALDH4A1

0.302697

0.000000

APITD1

0.296412

0.000000

CRABP2

0.285055

0.048900

ITGB4

0.281394

0.031500

BMP1

0.279983

0.001700

UNG

0.275001

0.000000

FAM134A

0.268202

0.043500

  1. Top 58 genes predicted as epigenetically regulated according to our logistic model and p-value calculation.
  2. Methylation-expression associations for underlined genes are shown in Figure 4.