Table 3 FunctSNP R Functions
Name | Description |
|---|---|
addSpecies | Adds a new species to the list of species recognized by FunctSNP |
downloadDB | Download pre-assembled species-specific databases |
getGeneID | Extract gene ID information using SNP IDs or SNP locations |
getGenes | Extract gene information using SNP IDs or Gene IDs |
getGenesByDist | Extract gene ID within a specified distance from a SNP |
getGO | Extract gene ontology using SNP IDs or Gene IDs |
getHighScoreSNP | Extract highest scoring SNP using SNP IDs or SNP locations |
getHomolo | Extract homologous genes using SNP IDs or Gene IDs |
getKEGG | Extract pathway names using SNP IDs or Gene IDs |
getNearGenes | Find nearest genes to either SNP IDs or SNP locations |
getOMIA | Extract OMIA using SNP IDs or Gene IDs |
getProteins | Extract protein information using SNP IDs or Gene IDs |
getSNPID | Extract SNP ID using Gene IDs or SNP locations |
getSNPs | Extract SNP information using SNP IDs or Gene IDs |
getTraits | Extract traits associated with QTL regions using SNP IDs or Gene IDs |
installedDBs | Displays the local available databases |
makeDB | Build a species-specific database from external sources |
setSpecies | Sets the default species |
supportedSpecies | Displays the supported species |
userAddedSpecies | Displays the species added by user |