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Table 1 Execution times for the calculation of CNVRs

From: CONAN: copy number variation analysis software for genome-wide association studies

Frequency Threshold [%]

Number of CNVRs

Execution Time [sec]

5

25,007

1,957

10

11,720

949

15

6,162

521

20

3,440

310

25

2,049

220

  1. The analyses were run on 1,644 subjects with on average 7,130 CNVs per sample. Apart from the total number of subjects and the total number of CNVs, the resulting number of CNV regions and the execution time depend on the threshold parameters.
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BMC Bioinformatics

ISSN: 1471-2105

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