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Table 1 Execution times for the calculation of CNVRs

From: CONAN: copy number variation analysis software for genome-wide association studies

Frequency Threshold [%] Number of CNVRs Execution Time [sec]
5 25,007 1,957
10 11,720 949
15 6,162 521
20 3,440 310
25 2,049 220
  1. The analyses were run on 1,644 subjects with on average 7,130 CNVs per sample. Apart from the total number of subjects and the total number of CNVs, the resulting number of CNV regions and the execution time depend on the threshold parameters.