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Table 2 Key Features

From: CONAN: copy number variation analysis software for genome-wide association studies



Supported CNV File Formats

Affymetrix Genotyping Console


Microsoft Excel


Comma Separated Values

Supported SNP Arrays

Affymetrix SNP Array 500K

Supported Phenotype File Formats

Microsoft Excel


Comma Separated Values

Supported Genotype File Formats

Affymetrix SNP 500K .call files


Genome-wide CNVR-determination


Genome-wide CNV-phenotype association analysis


Interactive Manhattan Plot with automatically drawn Bonferroni-threshold line


Visualization of the distribution of detected CNV regions on each chromosome


Exporting of all visualizations as PNG and JPEG images


Filtering and searching of statistical results


Highlighting of genome-wide significant results


Highlighting of regions which fit with results from the GWAS database


Exporting of all results as Microsoft Excel or CSV-Files


Direct links to entries in public databases:


UCSC Genome Browser, NCBI dbSNP, Ensembl, HapMap