Skip to main content

Table 2 Key Features

From: CONAN: copy number variation analysis software for genome-wide association studies

Feature

Details

Supported CNV File Formats

Affymetrix Genotyping Console

 

Microsoft Excel

 

Comma Separated Values

Supported SNP Arrays

Affymetrix SNP Array 500K

Supported Phenotype File Formats

Microsoft Excel

 

Comma Separated Values

Supported Genotype File Formats

Affymetrix SNP 500K .call files

Algorithms

Genome-wide CNVR-determination

 

Genome-wide CNV-phenotype association analysis

Visualization

Interactive Manhattan Plot with automatically drawn Bonferroni-threshold line

 

Visualization of the distribution of detected CNV regions on each chromosome

 

Exporting of all visualizations as PNG and JPEG images

Analysis

Filtering and searching of statistical results

 

Highlighting of genome-wide significant results

 

Highlighting of regions which fit with results from the GWAS database

 

Exporting of all results as Microsoft Excel or CSV-Files

 

Direct links to entries in public databases:

 

UCSC Genome Browser, NCBI dbSNP, Ensembl, HapMap