From: CONAN: copy number variation analysis software for genome-wide association studies
Feature | Details |
---|---|
Supported CNV File Formats | Affymetrix Genotyping Console |
Microsoft Excel | |
Comma Separated Values | |
Supported SNP Arrays | Affymetrix SNP Array 500K |
Supported Phenotype File Formats | Microsoft Excel |
Comma Separated Values | |
Supported Genotype File Formats | Affymetrix SNP 500K .call files |
Algorithms | Genome-wide CNVR-determination |
Genome-wide CNV-phenotype association analysis | |
Visualization | Interactive Manhattan Plot with automatically drawn Bonferroni-threshold line |
Visualization of the distribution of detected CNV regions on each chromosome | |
Exporting of all visualizations as PNG and JPEG images | |
Analysis | Filtering and searching of statistical results |
Highlighting of genome-wide significant results | |
Highlighting of regions which fit with results from the GWAS database | |
Exporting of all results as Microsoft Excel or CSV-Files | |
Direct links to entries in public databases: | |
UCSC Genome Browser, NCBI dbSNP, Ensembl, HapMap |