Table 1 Association Analysis of DCC Data
From: permGPU: Using graphics processing units in RNA microarray association studies
probe set | T |
|
| Symbol | Description |
|---|---|---|---|---|---|
220658_s_at | 33.7 | 0e+00 | 0.004 | ARNTL2 | aryl hydrocarbon receptor nuclear translocator-like 2 |
221249_s_at | 32.5 | 0e+00 | 0.006 | FAM117A | family with sequence similarity 117, member A |
218507_at | 27.8 | 0e+00 | 0.018 | C7orf68 | chromosome 7 open reading frame 68 |
204524_at | 27.2 | 0e+00 | 0.021 | PDPK1 | 3-phosphoinositide dependent protein kinase-1 |
218498_s_at | 27.2 | 0e+00 | 0.022 | ERO1L | ERO1-like (S. cerevisiae) |
208453_s_at | 27.1 | 0e+00 | 0.022 | XPNPEP1 | X-prolyl aminopeptidase (aminopeptidase P) 1, soluble |
201250_s_at | 26.4 | 0e+00 | 0.026 | SLC2A1 | solute carrier family 2 (facilitated glucose transporter), member 1 |
200621_at | 25.4 | 0e+00 | 0.036 | CSRP1 | cysteine and glycine-rich protein 1 |
210369_at | 24.8 | 0e+00 | 0.043 | SWAP70 | SWAP switching B-cell complex 70 kDa subunit |
205308_at | 24.3 | 0e+00 | 0.049 | FAM164A | family with sequence similarity 164, member A |
- Results from survival analysis of the Director's Challenge Consortium for the Molecular Classification of Lung Adenocarcinoma (DCC) data are shown in this table. The arrays were pre-processed using the RMA algorithm. The association between the summary expressions for each probe set and survival were tested using the Cox score test with B = 10000 permutation replicates. Probe sets significant at the two-sided FWER level of 0.05 are listed. The test statistic, permutation unadjusted and FWER adjusted P-values are denoted by T,
, and 
respectively. The gene symbol and description linked to each probe set was obtained from the Bioconductor hgu133a.db (version 2.3.5) annotation package.