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Table 1 Association Analysis of DCC Data

From: permGPU: Using graphics processing units in RNA microarray association studies

probe set T Symbol Description
220658_s_at 33.7 0e+00 0.004 ARNTL2 aryl hydrocarbon receptor nuclear translocator-like 2
221249_s_at 32.5 0e+00 0.006 FAM117A family with sequence similarity 117, member A
218507_at 27.8 0e+00 0.018 C7orf68 chromosome 7 open reading frame 68
204524_at 27.2 0e+00 0.021 PDPK1 3-phosphoinositide dependent protein kinase-1
218498_s_at 27.2 0e+00 0.022 ERO1L ERO1-like (S. cerevisiae)
208453_s_at 27.1 0e+00 0.022 XPNPEP1 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble
201250_s_at 26.4 0e+00 0.026 SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1
200621_at 25.4 0e+00 0.036 CSRP1 cysteine and glycine-rich protein 1
210369_at 24.8 0e+00 0.043 SWAP70 SWAP switching B-cell complex 70 kDa subunit
205308_at 24.3 0e+00 0.049 FAM164A family with sequence similarity 164, member A
  1. Results from survival analysis of the Director's Challenge Consortium for the Molecular Classification of Lung Adenocarcinoma (DCC) data are shown in this table. The arrays were pre-processed using the RMA algorithm. The association between the summary expressions for each probe set and survival were tested using the Cox score test with B = 10000 permutation replicates. Probe sets significant at the two-sided FWER level of 0.05 are listed. The test statistic, permutation unadjusted and FWER adjusted P-values are denoted by T, , and respectively. The gene symbol and description linked to each probe set was obtained from the Bioconductor hgu133a.db (version 2.3.5) annotation package.
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