MPRAP: An accessibility predictor for a-helical transmem-brane proteins that performs well inside and outside the membrane

Table 4 Assessing the quality of protein structures

PDB	Protein	Resolution	Accuracy	MCC
1s7bB	EmrE	3.8	0.51	-0.09
2f2mA	EmrE	3.7	0.48	-0.19
1jsqA	MsbA	4.5	0.55	-0.06
1pf4A	MsbA	3.8	0.55	0.10
1z2rA	MsbA	4.2	0.63	0.26
1l7vA	MsbA	3.2	0.81	0.64
2hydA	MsbA	3.0	0.85	0.69

Agreement between predicted and structurally derived accessibility on six PDB-structures. The four structures at the top are published structures that have been removed from the database due to discovered anomalies. The two structure at the bottom are recent structures of proteins from the same protein families that are present in PDB.

ISSN: 1471-2105