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Figure 3 | BMC Bioinformatics

Figure 3

From: svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identification

Figure 3

Heatmap of eight co-expression gene modules generated from a pattern pair by svdPPCS. M1: A conserved module with the down-regulation tendency appearing in both ACG data and MT data. M2: A divergent module with the down-regulation tendency appeared in ACG data but not MT data. M3: A divergent module with the down-regulation tendency appeared in MT data but not ACG data. M4: A conserved module with the up-regulation pattern appearing in both data sets. M5: A divergent module with the up-regulation tendency appearing in ACG data but not MT data. M6: A divergent module with the up regulation tendency appearing in MT data but not ACG data. M7: A divergent module with the down-regulation tendency appearing in ACG data and up-regulation tendency appearing in MT data. M8: A divergent module with up-regulation tendency appearing in ACG data and down-regulation tendency appearing in MT data. corr1, corr2: the average of the Pearson correlation coefficients among the member genes of the modules in ACG data and MT data, respectively. In plots of M1-M6, twenty randomly selected genes from the modules are mapped.

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BMC Bioinformatics

ISSN: 1471-2105

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