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Table 1 Functional enrichment analysis of the gene modules identified by svdPPCS

From: svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identification

Category

Term

Count

pValue

FDR

M1

    

   CC

GO:0044444~cytoplasmic part

15

4.53E-05

6.67E-04

   CC

GO:0032991~macromolecular complex

14

1.80E-04

2.64E-03

   CC

GO:0005811~lipid particle

5

2.37E-03

3.44E-02

   CC

GO:0043234~protein complex

11

2.83E-03

4.08E-02

   CC

GO:0044446~intracellular organelle part

12

4.96E-03

7.07E-02

M2

    

   MF

GO:0003735~structural constituent of ribosome

42

2.73E-12

4.54E-11

   CC

GO:0030529~ribonucleoprotein complex

53

1.70E-09

2.50E-08

   BP

GO:0009059~macromolecule biosynthetic process

60

5.76E-09

1.03E-07

   BP

GO:0006412~translation

52

1.71E-08

3.05E-07

   CC

GO:0044432~endoplasmic reticulum part

15

5.71E-07

8.40E-06

   CC

GO:0005783~endoplasmic reticulum

30

1.71E-06

2.51E-05

   MF

GO:0005198~structural molecule activity

50

2.64E-06

4.39E-05

   CC

GO:0044444~cytoplasmic part

120

4.06E-06

5.98E-05

   BP

GO:0009058~biosynthetic process

78

3.50E-06

6.25E-05

M3

    

   MF

GO:0016491~oxidoreductase activity

26

3.75E-08

6.23E-07

   BP

GO:0006091~generation of precursor metabolites and energy

21

4.74E-08

8.46E-07

   BP

GO:0006118~electron transport

17

2.59E-07

4.63E-06

   CC

GO:0044429~mitochondrial part

19

3.65E-06

5.37E-05

   BP

GO:0042775~organelle ATP synthesis coupled electron transport

9

5.57E-06

9.96E-05

   BP

GO:0006119~oxidative phosphorylation

11

3.22E-05

5.76E-04

   CC

GO:0005743~mitochondrial inner membrane

11

1.19E-04

1.74E-03

   CC

GO:0005740~mitochondrial envelope

12

2.15E-04

3.17E-03

   CC

GO:0005746~mitochondrial respiratory chain

7

5.32E-04

7.81E-03

M4

    

   BP

GO:0006259~DNA metabolic process

9

7.59E-04

1.35E-02

   BP

GO:0043285~biopolymer catabolic process

6

3.14E-03

5.46E-02

   BP

GO:0006325~establishment and/or maintenance of chromatin architecture

6

3.32E-03

5.76E-02

   BP

GO:0006323~DNA packaging

6

3.32E-03

5.76E-02

   BP

GO:0006464~protein modification process

12

3.44E-03

5.97E-02

   BP

GO:0043412~biopolymer modification

12

4.70E-03

8.07E-02

M5

    

   BP

GO:0007010~cytoskeleton organization and biogenesis

57

5.19E-11

9.28E-10

   BP

GO:0030029~actin filament-based process

30

7.43E-11

1.33E-09

   BP

GO:0030036~actin cytoskeleton organization and biogenesis

29

1.90E-10

3.39E-09

   CC

GO:0005856~cytoskeleton

41

1.29E-08

1.90E-07

   CC

GO:0044430~cytoskeletal part

34

5.62E-08

8.27E-07

   CC

GO:0015629~actin cytoskeleton

20

1.49E-07

2.19E-06

   BP

GO:0006996~organelle organization and biogenesis

83

1.40E-07

2.50E-06

   BP

GO:0048869~cellular developmental process

85

1.43E-07

2.55E-06

   BP

GO:0007015~actin filament organization

17

3.96E-07

7.08E-06

M6

    

   MF

GO:0032555~purine ribonucleotide binding

32

3.22E-05

5.34E-04

   MF

GO:0017076~purine nucleotide binding

32

5.81E-05

9.64E-04

   MF

GO:0005524~ATP binding

27

7.40E-05

1.23E-03

   MF

GO:0032559~adenyl ribonucleotide binding

27

7.40E-05

1.23E-03

   MF

GO:0030554~adenyl nucleotide binding

27

1.39E-04

2.30E-03

   MF

GO:0016876~ligase activity, forming aminoacyl-tRNA and related component

7

2.28E-04

3.77E-03

   MF

GO:0016875~ligase activity, forming carbon-oxygen bonds

7

2.28E-04

3.77E-03

   MF

GO:0004812~aminoacyl-tRNA ligase activity

7

2.28E-04

3.77E-03

   BP

GO:0043039~tRNA aminoacylation

7

3.02E-04

5.39E-03

M7

    

   BP

GO:0019752~carboxylic acid metabolic process

3

2.68E-03

4.68E-02