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Table 1 Functional enrichment analysis of the gene modules identified by svdPPCS

From: svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identification

Category Term Count pValue FDR
M1     
   CC GO:0044444~cytoplasmic part 15 4.53E-05 6.67E-04
   CC GO:0032991~macromolecular complex 14 1.80E-04 2.64E-03
   CC GO:0005811~lipid particle 5 2.37E-03 3.44E-02
   CC GO:0043234~protein complex 11 2.83E-03 4.08E-02
   CC GO:0044446~intracellular organelle part 12 4.96E-03 7.07E-02
M2     
   MF GO:0003735~structural constituent of ribosome 42 2.73E-12 4.54E-11
   CC GO:0030529~ribonucleoprotein complex 53 1.70E-09 2.50E-08
   BP GO:0009059~macromolecule biosynthetic process 60 5.76E-09 1.03E-07
   BP GO:0006412~translation 52 1.71E-08 3.05E-07
   CC GO:0044432~endoplasmic reticulum part 15 5.71E-07 8.40E-06
   CC GO:0005783~endoplasmic reticulum 30 1.71E-06 2.51E-05
   MF GO:0005198~structural molecule activity 50 2.64E-06 4.39E-05
   CC GO:0044444~cytoplasmic part 120 4.06E-06 5.98E-05
   BP GO:0009058~biosynthetic process 78 3.50E-06 6.25E-05
M3     
   MF GO:0016491~oxidoreductase activity 26 3.75E-08 6.23E-07
   BP GO:0006091~generation of precursor metabolites and energy 21 4.74E-08 8.46E-07
   BP GO:0006118~electron transport 17 2.59E-07 4.63E-06
   CC GO:0044429~mitochondrial part 19 3.65E-06 5.37E-05
   BP GO:0042775~organelle ATP synthesis coupled electron transport 9 5.57E-06 9.96E-05
   BP GO:0006119~oxidative phosphorylation 11 3.22E-05 5.76E-04
   CC GO:0005743~mitochondrial inner membrane 11 1.19E-04 1.74E-03
   CC GO:0005740~mitochondrial envelope 12 2.15E-04 3.17E-03
   CC GO:0005746~mitochondrial respiratory chain 7 5.32E-04 7.81E-03
M4     
   BP GO:0006259~DNA metabolic process 9 7.59E-04 1.35E-02
   BP GO:0043285~biopolymer catabolic process 6 3.14E-03 5.46E-02
   BP GO:0006325~establishment and/or maintenance of chromatin architecture 6 3.32E-03 5.76E-02
   BP GO:0006323~DNA packaging 6 3.32E-03 5.76E-02
   BP GO:0006464~protein modification process 12 3.44E-03 5.97E-02
   BP GO:0043412~biopolymer modification 12 4.70E-03 8.07E-02
M5     
   BP GO:0007010~cytoskeleton organization and biogenesis 57 5.19E-11 9.28E-10
   BP GO:0030029~actin filament-based process 30 7.43E-11 1.33E-09
   BP GO:0030036~actin cytoskeleton organization and biogenesis 29 1.90E-10 3.39E-09
   CC GO:0005856~cytoskeleton 41 1.29E-08 1.90E-07
   CC GO:0044430~cytoskeletal part 34 5.62E-08 8.27E-07
   CC GO:0015629~actin cytoskeleton 20 1.49E-07 2.19E-06
   BP GO:0006996~organelle organization and biogenesis 83 1.40E-07 2.50E-06
   BP GO:0048869~cellular developmental process 85 1.43E-07 2.55E-06
   BP GO:0007015~actin filament organization 17 3.96E-07 7.08E-06
M6     
   MF GO:0032555~purine ribonucleotide binding 32 3.22E-05 5.34E-04
   MF GO:0017076~purine nucleotide binding 32 5.81E-05 9.64E-04
   MF GO:0005524~ATP binding 27 7.40E-05 1.23E-03
   MF GO:0032559~adenyl ribonucleotide binding 27 7.40E-05 1.23E-03
   MF GO:0030554~adenyl nucleotide binding 27 1.39E-04 2.30E-03
   MF GO:0016876~ligase activity, forming aminoacyl-tRNA and related component 7 2.28E-04 3.77E-03
   MF GO:0016875~ligase activity, forming carbon-oxygen bonds 7 2.28E-04 3.77E-03
   MF GO:0004812~aminoacyl-tRNA ligase activity 7 2.28E-04 3.77E-03
   BP GO:0043039~tRNA aminoacylation 7 3.02E-04 5.39E-03
M7     
   BP GO:0019752~carboxylic acid metabolic process 3 2.68E-03 4.68E-02