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Table 3 Parameter values used in the first application example

From: TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

Parameter Value
Maximum number of mismatches at 5'-end 3
Maximum number of mismatches at 3'-end 3
Sequence range from the ends 46 bp
Continuous trimming Yes
Remove sequences not matching tag sequence No ("don't remove")
Minimum read length 50 bp
Maximum read length Default (maximum length)
Threshold for occurrence of N 5%
Dereplicate data (remove exact sequence copies) Yes
Fragment-to-fragment splitting Yes
Maximum number of mismatches for splitting 3