From: SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Assembler | ε no _m | ε mis _m |
|
|
|
| N50 | Genome coverage |
---|---|---|---|---|---|---|---|---|
 | % of total assembly | No. of events/Mbp of assembly | Kbp | % | ||||
S-SOPRA (unpaired) | .2 | .14 | .33 | 5.25 | - | - | 2.1 | 98.4 |
V-SOPRA (unpaired) | .17 | .01 | 0 | 0 | - | - | 6.6 | 97.7 |
Velvet (unpaired) | .16 | .01 | 0 | 0 | - | - | 7 | 97.2 |
S-SOPRA (paired) | .3 | .13 | .49 | 5.58 | 0.66 | 3.12 | 44.2 | 98.4 |
V-SOPRA (paired) | .18 | .01 | .33 | 0 | 0 | 0 | 74 | 97.7 |
Velvet (paired1) | .16 | .02 | 3.28 | .82 | 0 | 0.16 | 46.7 | 97.7 |
Velvet (paired2) | .14 | .81 | 4.93 | 4.1 | 1.64 | 7.56 | 118.8 | 96.6 |