Skip to main content

Advertisement

Table 1 Overview of PPI and DDI datasets

From: Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions

Datasets Nodes Edges Source
PPI (BioGrid Release 2.0.40) 4,621 35,353 http://www.thebiogrid.org/
A: DDI (iPfam) 2,147 4,498 http://ipfam.sanger.ac.uk/
B: DDI (InterDom v2.0 : High Confidence) 2,295 14,854 http://interdom.i2r.a-star.edu.sg/
C: DDI (InterDom v2.0 : All) 3,990 167,516 http://interdom.i2r.a-star.edu.sg/
DDI (A + B) 3,382 18,207 -
DDI (A + C) 4,483 169,737 -
  1. The column 'Datasets' indicates the name of each dataset. Numbers of nodes included in each dataset are shown under 'Nodes' and numbers of edges included in each dataset are shown under 'Edges'. 'Source' indicates the source of each dataset. PPI dataset release 2.0.40 was downloaded from www.thebiogrid.org. The DDI dataset was from ipfam.sanger.ac.uk (release 20.0), and from http://interdom.i2r.a-star.edu.sg/ (v2.0).