Table 3 Summary of protein complex predictions
Algorithm/Verification | Original output of algorithm* | Verified with DDI (A) | Verified with DDI (A + B) | Verified with DDI (A + C) | ||||
|---|---|---|---|---|---|---|---|---|
| Â | Numbers | Average size | Numbers | Average size | Numbers | Average size | Numbers | Average size |
MCL | 487 | 4.49 | 12 | 4.17 | 25 | 4.56 | 42 | 4.43 |
MCODE | 90 | 5.87 | 11 | 5.00 | 23 | 5.35 | 34 | 5.71 |
Clustering Coefficient | 434 | 8.23 | 47 | 4.55 | 104 | 5.25 | 178 | 5.88 |