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Figure 4 | BMC Bioinformatics

Figure 4

From: Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast computing of intermolecular contact distance and residue desolvation

Figure 4

Analysis of the RotBUS orientational sampling. A) Percentage of cases with concentration of near-native solutions (9 Å ligand RMSD with respect to a reference formed by the unbound molecules superimposed on the complex structure) above the value indicated in abscissas for the rigid-body docking sets generated by RRR method at 9 Å (blue), 12.5 Å (green) and 14 Å resolution (red). B) Success rates (i.e. percentage of cases with near-native solutions -10 Å ligand RMSD with respect to the complex structure- within the top ranked docking poses indicated in abscissas) after scoring by pyDock the docking sets generated at 14 Å resolution, using weighting factors for the van der Waals term 0 (red), 0.02 (green), and 0.1 (blue). C) Same as in B but in logarithmic scale.

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BMC Bioinformatics

ISSN: 1471-2105

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