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Table 1 Docking results with different rotational sampling methods.

From: Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast computing of intermolecular contact distance and residue desolvation

ρ(Å)

% of cases with solution

# conformations

 

RRT

TRR

RRR

 

9.0

100.0

100.0

100.0

1196123

12.5

98.8

100.0

100.0

187110

13.0

95.2

94.0

97.6

152156

13.5

92.8

90.5

95.2

123687

14.0

92.8

88.1

91.7

100902

14.5

88.1

88.1

90.5

82903

15.0

84.5

84.5

84.5

69395

15.5

81.0

78.6

81.0

57643

  1. Resolution (ρ), percentage of cases with near-native solutions generated by each method and average number of generated conformations.