Nonparametric methods for the analysis of single-color pathogen microarrays

BMC Bioinformatics

Table 2 Correlation between replicate and reverse complemented probe pairs

Pearson Correlation (R)		10⁶copies input		10⁴copies input		No West Nile Virus
		Replicates	Reverse Complements	Replicates	Reverse Complements	Replicates	Reverse Complements
Overall	West Nile Virus probes	0.92	0.85	0.88	0.72	0.83	0.27
	non-target probes	0.72	0.27	0.75	0.31	0.79	0.35
Tenth percentile	West Nile Virus probes	0.90	0.83	0.84	0.68	0.77	·-0.01 †
	non-target probes	0.86	0.36	0.85	0.40	0.79	0.19
		n = 11		n = 12		n = 3

ISSN: 1471-2105