Interaction prediction and classification of PDZ domains

BMC Bioinformatics

Table 3 Prediction results for class prediction of PDZ domains for both trigram and bigram models.

	TP Rate		FP Rate		Precision		Accuracy (%)
	Trigram	Bigram	Trigram	Bigram	Trigram	Bigram	Trigram	Bigram
ClassI, ClassII, Class I-II*	0.907	0.895	0.081	0.093	0.911	0.902	90.7	89.5
ClassI, ClassII	0.918	0.956	0	0.200	1	0.915	93.8	90.8
ClassI, ClassI-II	0.900	0.955	0	0.227	1	0.894	92.4	89.4
ClassII, ClassI-II	1	0.813	0.107	0	0.812	1	92.7	92.7

*The first row shows a multi-class learning and remaining rows shows the binary-class learning for pair wise combinations of three classes. For multi-class learning, weighted average results were shown.

ISSN: 1471-2105