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Table 2 Putative p53 target genes predicted by our method.

From: Quantitative model for inferring dynamic regulation of the tumour suppressor gene p53

 

Order

Probe Set ID

Gene Symbol

error/regulation

 

Order

Probe Set ID

Gene Symbol

error/regulation

1

1

217732_S_AT

ITM2B

0.0382 (+)

26

87

202431_S_AT

MYC

0.6894 (-)

2

2

205347_S_AT

TMSL8

0.0828 (+)

27

91

203509_AT

SORL1

0.7450 (+)

3

3

211630_S_AT

GSS

0.1100 (+)

28

125

219863_AT

HERC5

1.0149 (+)

4

4

201202_AT

PCNA

0.1148 (+)

29

132

205692_S_AT

CD38

1.0689 (+)

5

5

208812_X_AT

HLA-C

0.1216 (+)

30

141

213204_AT

PARC

1.1296 (+)

6

6

202649_X_AT

RPS19

0.1396 (+)

31

145

209375_AT

XPC

1.1468 (+)

7

7

211714_X_AT

TUBB

0.1495 (+)

32

147

201834_AT

PRKAB1

1.1574 (+)

8

9

201761_AT

MTHFD2

0.1848 (-)

33

152

209849_S_AT

RAD51C

1.2028 (+)

9

10

202605_AT

GUSB

0.1933 (+)

34

159

219361_S_AT

ISG20L1

1.2623 (+)

10

11

209140_X_AT

HLA-B

0.1956 (+)

35

178

204958_AT

PLK3

1.4262 (-)

11

12

210968_S_AT

RTN4

0.1996 (-)

36

185

205266_AT

LIF

1.5033 (+)

12

13

201476_S_AT

RRM1

0.2046 (+)

37

202

202729_S_AT

LTBP1

1.6431 (+)

13

14

204026_S_AT

ZWINT

0.2087 (+)

38

203

213293_S_AT

TRIM22

1.6431 (+)

14

18

216705_S_AT

ADA

0.2235 (+)

39

205

204321_AT

NEO1

1.6711 (+)

15

20

202503_S_AT

KIAA0101

0.2318 (+)

40

215

205043_AT

CFTR

1.7426 (+)

16

21

218740_S_AT

CDK5RAP3

0.2382 (+)

41

234

213523_AT

CCNE1

1.9631 (+)

17

23

213060_S_AT

CHI3L2

0.2785 (+)

42

244

218611_AT

IER5

2.0564 (-)

18

24

221943_X_AT

RPL38

0.2858 (+)

43

257

202284_S_AT

CDKN1A

2.1920 (+)

19

25

218883_S_AT

MLF1IP

0.2891 (+)

44

275

208478_S_AT

BAX

2.3018 (+)

20

30

201721_S_AT

LAPTM5

0.3121 (+)

45

277

202095_S_AT

BIRC5

2.3172 (-)

21

31

208149_X_AT

DDX11

0.3408 (+)

46

279

204009_S_AT

KRAS

2.3263 (-)

22

32

209773_S_AT

RRM2

0.3454 (+)

47

290

203752_S_AT

JUND

2.4195 (+)

23

33

218403_AT

TRIAP1

0.3500 (+)

48

306

217373_X_AT

MDM2

2.5517 (-)

24

36

201577_AT

NME1

0.3645 (+)

49

309

211725_S_AT

BID

2.5805 (-)

25

38

210774_S_AT

NCOA4

0.3703 (+)

50

312

203725_AT

GADD45A

2.6107 (+)

  1. The first 25 genes have minimal model error and the other 25 genes are known p53 target genes. (+: gene is activated by p53; -: gene is inhibited by p53)