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Table 3 Confusion matrices for strategies 1 and 2

From: Automatic structure classification of small proteins using random forest

Strategy 1

 

Predicted

  

CL

FO

SF

FA

NA

Actual

CL

2813

10

0

12

511

 

FO

92

125

1

30

30

 

SF

21

2

56

23

0

 

FA

30

5

13

336

4

 

NA

216

3

0

9

2264

Strategy 2

 

Predicted

  

CL

FO

SF

FA

NA

Actual

CL

3327

4

1

14

-

 

FO

134

115

6

23

-

 

SF

21

1

56

24

-

 

FA

44

3

12

329

-

 

-

-

-

-

-

-

  1. The confusion matrices used for classification of domain pairs according to their shared structural level following strategies 1 and 2. CL = shared Class, FO = shared Fold, SF = shared Super-family, FA = shared Family and NA = no shared structural level.