Table 6 Classification for the selected unclassified target domains
From: Automatic structure classification of small proteins using random forest
Target PDB Id PDB Title | Predicted Classification (sunid) | Template | |
|---|---|---|---|
2JZ6 | 50S ribosomal protein L28 | Scop_cf DNA/RNA-binding 3-helical bundle (46688) | 1SAN, 1HOM |
| Â | Â | scop_cf Spectrin repeat-like (46965) | 1CUN, 1U4Q |
2K2D | C-terminal domain of human pirh2 | scop_cf Cupredoxin-like (49502) | 1V54, 1OCR, 2DYS, 1OCC |
| Â | Â | scop_cf Rubredoxin-like (57769) | 2EIM, 2DYS, 1OCZ |
| Â | Â | scop_cf Glucocorticoid receptor-like (DNA-binding domain) alpha+beta metal(zinc)-bound fold (57715) | 1B8T |
2K5J | Protein yiiF Uncharacterised protein | scop_cf DNA/RNA binding 3 helical bundle (46688) | 1FJL, 1MBJ, 2DS5 |
| Â | Â | scop_sf "Winged helix" DNA binding domain (46785) | 2GZW |
| Â | Â | scop_cf Albumin binding domain like (46996) | 1GJS(T), 1J78, 1MA9 |
2RPJ | Fn 14 Cystein Rich Domain (CRD) | scop_sf t-snare proteins (47661) | 1S94, 1EZ3, 1BR0 |
| Â | Â | scop_cf Spectrin repeat-like (46965) | 1E2A, 2E2A |
2ZM6 | 30 S ribosomal subunit | Different scop_fa covering 22 lineages of various Ribosomal protein S(2-20) families* | 1HNW, 2UU9, 1IBL 2F4V, 1XNQ, 2HGP, 2HGI |
3BPJ | Human translation initiation factor 3 | scop_cf Long alpha hairpin fold (46556)** | 2OTJ, 1YHQ, 1VQK |
| Â | Â | scop_cf Tetracyclin repressor-like (48497) | 1ZK8 |
3H3M | Flagellar protein FliT | scop_fa Voltage-gated potassium channels (81323) | 2HVK, 1JVM, 1R3J 1K4D |
| Â | Â | scop_cf Spectrin repeat-like (46965) | 1G73, 1FEW |
| Â | Â | scop_fa MIT domain (116847) | 1YXR |
3ERM | Conserved protein with unknown function | scop_fa Myb/SANT domain (46739) | 1IDY, 1MSE, 1MBJ |
| Â | Â | scop_cf alpha-alpha superhelix (48370) | 1HF8, 1HG5, 1HFA |
| Â | Â | scop_fo Spectrin repeat-like (46965) | 1E2A, 2E2A |
3GI7 | Secreted protein of unknown function | scop_cf DNA/RNA-binding 3-helical bundle (46688) | 1P7I, 2HDD, 1DU0, 1FTT |