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Table 2 Description of the factors extracted from the raw data and from the hatch and weight adjusted data

From: A factor model to analyze heterogeneity in gene expression

Factors extracted from the raw AF expression dataset

 

Individual information

Gene information

 

hatch

dam

weight

oligo size

chip block

chip row

chip column

Factor 1

8.92E-05

0.139

0.129

2.20E-16

2.20E-16

0.074

0.179

Factor 2

0.074

0.913

4.70E-03

2.20E-16

2.20E-16

0.041

0.857

Factor 3

1.90E-02

0.848

0.489

2.55E-14

2.20E-16

0.716

0.376

Factor 4

6.00E-03

0.127

0.959

1.41E-07

2.20E-16

0.707

0.167

Factor 5

0.435

0.217

0.884

0.529

2.20E-16

4.97E-03

9.99E-05

Factor 6

0.946

0.412

0.615

1.79E-07

2.20E-16

0.876

5.11E-07

Factors extracted from the AF expression dataset adjusted for the hactch and body weight effects

 

Individual information

Gene information

 

hatch

dam

Weight

oligo size

chip block

chip row

chip column

Factor 1

1.13E-04

0.219

0.156

2.20E-16

2.20E-16

0.078

0.209

Factor 2

0.052

0.841

3.40E-03

2.20E-16

2.20E-16

0.036

0.814

Factor 3

0.049

0.819

0.569

2.16E-11

2.20E-16

0.554

0.16

Factor 4

0.178

0.031

0.869

6.80E-09

2.20E-16

0.897

0.885

Factor 5

0.949

0.727

0.647

2.79E-12

2.20E-16

0.291

2.36E-10

  1. The p-value is given for each association test (see Methods section). Considering a threshold of 1%, the significant p-values are in bold.