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Table 3 Discrimination of native structures in Decoys 'R' Us multiple decoys sets

From: Protein structure modelling and evaluation based on a 4-distance description of side-chain interactions

  Resolution, Å Rank of native structure Z-score of native structure Number of decoys RMSD range, Å
4state_reduced      
   1sn3 1.20 1 5.3 660 1.3 - 9.1
   4rxn 1.20 1 5.7 677 1.4 - 8.1
   4pti 1.50 1 4.4 686 1.4 - 9.3
   1ctf 1.70 1 4.7 630 1.3 - 9.1
   1r69 2.00 1 6.6 676 0.9 - 8.3
   3icb 2.30 15 2.5 654 0.9 - 9.4
   2cro 2.35 1 4.1 673 0.8 - 8.3
fisa      
   4icb 1.60 1 6.6 500 4.8 - 14.1
   2cro 2.35 1 5.4 501 4.3 - 12.6
   1fc2 2.80 33 1.6 501 3.1 - 10.6
   1hdd-C 2.80 1 5.3 501 2.8 - 12.9
fisa_casp3      
   smd3 ? 1 7.1 1200 8.5 - 17.0
   1bg8-A 2.20 1 6.1 1200 6.0 - 15.8
   1bl0 2.30 1 6.0 972 3.6 - 18.2
   1eh2 NMR 1 4.4 2413 4.0 - 15.3
   1jwe NMR 1 8.3 1407 7.8 - 20.9
lattice_ssfit      
   4icb 1.60 1 5.1 1988 4.7 - 12.9
   1ctf 1.70 1 6.2 1999 5.4 - 12.8
   1fca 1.80 1 4.2 1986 5.1 - 11.4
   1pgb 1.92 1 6.2 1997 5.8 - 12.9
   1beo 2.20 1 6.6 1998 7.0 - 15.6
   1dkt-A 2.90 1 5.5 1995 6.7 - 14.0
   1nkl NMR 1 5.2 1995 5.3 - 13.6
   1trl-A NMR 1 5.8 1998 5.4 - 12.5
lmds      
   1igd 1.10 1 8.1 501 3.1 - 12.6
   2ovo 1.50 1 5.6 348 4.4 - 13.4
   4pti 1.50 1 5.2 344 4.9 - 13.2
   1ctf 1.70 1 7.6 496 3.6 - 12.5
   1b0n-B 1.90 1 5.3 498 2.4 - 6.0
   1shf-A 1.90 1 7.7 437 4.4 - 12.3
   2cro 2.35 1 7.7 501 3.9 - 13.5
   1fc2 2.80 49 1.5 501 4.0 - 8.4
   1bba NMR 501 -3.8 501 2.8 - 8.9
   1dtk NMR 3 3.6 216 4.3 - 12.6
  1. Each decoy structure and the native structure were scored and ranked using the Hunter's ScSc term only. Rank of 1 corresponds to the structure with the lowest score. The Z-score of the native structure was calculated to estimate Hunter's ability to discriminate the native structure from decoy structures. Resolution is of the X-ray structure.