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Table 4 Discrimination of native structures in CASP 7/8 decoys sets

From: Protein structure modelling and evaluation based on a 4-distance description of side-chain interactions

 

Resolution, Å

Rank of native structure

Number of decoys

Z-score of native structure

RMSD range, Å

CASP7

     

   T0288

1.1

2

373

2.3

1.6 - 11.2

   T0359

1.4

1

383

2.7

1.8 - 12.8

   T0340

1.5

1

416

2.0

0.7 - 8.9

   T0324_D1

1.5

1

342

3.4

1.6 - 13.3

   T0324_D2

1.5

1

400

3.2

1.2 - 10.7

   T0305

1.6

1

321

2.3

0.9 - 19.8

   T0332

1.6

1

343

2.9

1.5 - 10.9

   T0366

1.7

1

414

2.7

0.9 - 8.0

   T0291

1.8

1

252

1.9

2.0 - 19.2

   T0290

1.8

2

196

2.3

0.5 - 13.4

   T0313

1.9

1

366

2.9

2.4 - 19.0

   T0311

1.9

1

403

2.8

1.4 - 11.1

   T0295_D1

1.9

1

295

2.2

1.1 - 15.1

   T0295_D2

1.9

1

235

2.2

1.1 - 23.9

   T0303_D1

1.9

1

194

3.9

1.7 - 14.1

   T0308

2.0

1

385

2.1

1.3 - 13.9

   T0317

2.0

1

341

3.1

1.6 - 13.1

   T0346

2.0

6

348

1.8

0.4 - 13.6

   T0339_D2

2.1

1

399

2.8

1.7 - 15.7

   T0345

2.1

1

314

2.2

0.8 - 16.0

   T0367

2.2

1

337

3.3

2.0 - 17.2

   T0292_D1

2.2

4

298

2.2

1.3 - 10.8

   T0292_D2

2.2

1

174

4.3

3.0 - 13.8

   T0315

2.2

1

384

2.8

0.9 - 13.0

   T0334

2.5

1

328

2.0

1.5 - 45.5

   T0326

2.5

1

281

2.2

3.1 - 29.3

   T0328

2.8

1

317

2.9

1.7 - 40.1

CASP8

     

   T0488-D1

1.3

1

341

3.3

1.1 - 5.6

   T0508-D1

1.5

1

283

3.5

1.3 - 11.8

   T0459-D1

1.7

1

296

3.5

1.4 - 8.4

   T0423-D1

1.7

1

349

3.2

1.2 - 15.1

   T0454-D1

1.8

22

464

1.5

0.8 - 6.2

   T0504-D3

1.8

1

241

3.8

1.2 - 21.6

   T0445-D1

1.8

1

174

6.1

1.4 - 11.2

   T0392-D1

1.8

1

327

2.2

1.2 - 8.1

   T0447-D1

1.9

1

116

4.3

1.3 - 32.5

   T0505-D1

1.9

1

246

3.0

1.3 - 10.3

   T0506-D1

1.9

1

297

3.9

1.4 - 11.3

   T0432-D1

1.9

1

169

3.9

1.4 - 17.1

   T0388-D1

2.0

1

133

3.5

1.1 - 10.7

   T0402-D1

2.0

1

310

4.2

1.5 - 22.6

   T0418-D1

2.0

1

335

3.4

1.1 - 11.2

   T0418-D2

2.0

1

344

4.2

1.5 - 10.2

   T0422-D2

2.0

1

299

3.1

1.6 - 12.3

   T0491-D1

2.0

12

319

2.3

1.6 - 10.9

   T0428-D1

2.0

3

335

2.4

0.7 - 9.4

   T0426-D1

2.1

3

168

2.7

0.5 - 6.0

   T0396-D1

2.1

1

403

2.8

1.4 - 13.9

   T0398-D1

2.1

1

273

2.5

0.6 - 33.5

   T0398-D2

2.1

1

301

2.9

0.6 - 10.6

   T0453-D1

2.1

3

322

3.2

1.3 - 8.0

   T0435-D1

2.2

1

296

3.4

1.8 - 12.6

   T0400-D1

2.2

1

270

3.9

1.3 - 11.3

   T0452-D1

2.2

1

279

4.5

1.7 - 13.2

   T0452-D2

2.2

1

319

3.2

1.0 - 15.0

   T0486-D1

2.3

1

302

4.2

1.3 - 9.9

   T0404-D1

2.4

1

317

3.7

0.9 - 7.4

   T0479-D1

2.4

4

317

2.7

1.2 - 7.7

   T0456-D2

2.5

2

331

2.6

2.7 - 8.8

   T0390-D1

2.7

1

287

2.5

1.4 - 16.7

   T0455-D1

2.7

1

297

3.3

1.4 - 8.3

   T0416-D1

2.7

1

265

2.6

1.4 - 42.1

   T0450-D1

2.7

3

263

2.6

1.5 - 53.5

   T0458-D1

2.7

7

342

1.9

0.6 - 9.3

   T0438-D1

2.8

5

254

2.8

1.3 - 11.2

   T0438-D2

2.8

11

311

1.7

1.0 - 12.5

   T0442-D1

2.8

11

250

1.4

1.1 - 25.1

   T0442-D2

2.8

66

315

0.8

0.7 - 21.6

   T0444-D1

2.8

7

314

2.2

0.9 - 7.8

   T0461-D1

2.8

1

307

2.9

1.6 - 10.0

   T0441-D2

2.9

1

271

3.1

1.8 - 7.2

   T0470-D1

2.9

36

334

1.3

1.7 - 11.0

   T0470-D2

2.9

16

324

1.6

1.0 - 13.4

  1. See a legend of Table 3 for details.
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