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Figure 1 | BMC Bioinformatics

Figure 1

From: SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments

Figure 1

Architecture of the default SeqAdapt system. The default SeqAdapt system consist of a number of services and analysis programs that can be replaced to allow for a high level of customization. Default sample tracking, data management, and analysis components are available. These components can be replaced with other systems to suit individual needs. All interfaces between the components are standardized using REST to enable interoperability. The default system uses SLIMseq for initially entering of sample/experiment annotation information, and publishes this information using JSON (over REST). An Addama service accesses the SLIMseq web service and stores the information in a JCR repository. When runs have been completed SLIMseq is updated and this information is pulled into Addama. To run an analysis the Addama Robot system is used, this system allows for any command line utility to be prepared, triggered and monitored. When an analysis is complete the results are automatically pulled into an Addama repository. Customized applications can also be written against the Addama web services.

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