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Figure 5 | BMC Bioinformatics

Figure 5

From: Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

Figure 5

Visualization of contigs in the P. sativum cluster PsCL7 using SeqGrapheR. (A) The graph layout was calculated using a 3D version of the Fruchterman and Reingold algorithm. The colors of the nodes are based on the results of the sequence assembly into contigs using the CAP3 program, which are then schematically represented in panel B. Numbers label the loops discussed in the text. The contig alignment is shown below the graph together with a diagram of corresponding regions of the Angela LTR-retrotransposon (C).

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BMC Bioinformatics

ISSN: 1471-2105

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