Table 1 Characteristics of graph structures visualized in Fig. 4.
Cluster ID | Cluster size [reads] | Number of edges | Maximal degree | Graph diameter | Mean density | Maximal Modularity | Mean Blast score | Class of repetitive sequence | Name | Monomer length |
|---|---|---|---|---|---|---|---|---|---|---|
PsCL21 | 1614 | 269813 | 1166 | 6 | 20.73% | 0.19 | 103.84 | Satellite | PisTR-B | 50 bp |
PsCL44 | 737 | 4536 | 81 | 19 | 1.67% | 0.79 | 121.85 | Satellite | TR-11 | 510 bp |
GmCL4 | 10474 | 4859502 | 5293 | 7 | 8.86% | 0.2 | 105.7 | Satellite | SB92 | 92 bp |
GmCL3, GmCL4, GmCL182, GmCL216 | 26089 | 11041274 | 6998 | 10 | 3.24% | 0.50 | 101.72 | Satellite | SB92 | 92 bp |
PsCL16 | 1952 | 38347 | 200 | 19 | 2.01% | 0.69 | 117.15 | Ty3/gypsy | Ogre-PA | NA |
GmCL16 | 3610 | 152029 | 455 | 34 | 2.33% | 0.65 | 114.48 | Ty3/gypsy | NA | NA |
GmCL2 | 17701 | 959759 | 434 | 62 | 0.61% | 0.7 | 126.53 | Ty3/gypsy | NA | NA |
GmCL14 | 4209 | 93866 | 85 | 91 | 1.06% | 0.79 | 155.2 | rDNA | rDNA | ~7.6 kbp |