Skip to main content
Figure 1 | BMC Bioinformatics

Figure 1

From: SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read

Figure 1

Detailed data-flow diagram of the SeqTrim pipeline. It consists of four major steps (vector cleaning and removal of specialised features, two quality trimming steps, and contamination removal) that can be executed in any order or skipped, and two ending steps (artefact removal, and low complexity and repeat masking). The output is stored in a private area defined by an e-mail address, and can be looked up asynchronously.

Back to article page