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Table 1 List of integrated databases and methods applied to extract data

From: GeneBrowser 2: an application to explore and identify common biological traits in a set of genes

Type Name GeNS Real-time data retrieval URL
Gene Ensembl X   http://www.ensembl.org/
  HGNC X   http://www.genenames.org/
  UniGene   X http://www.ncbi.nlm.nih.gov/unigene/
  Entrez Gene X X http://www.ncbi.nlm.nih.gov/gene/
  RefSeq X   http://www.ncbi.nlm.nih.gov/refseq/
  KEGG Genes X X http://www.kegg.jp/
Protein UniProtKB X X http://www.uniprot.org/
  Gene3D X   http://gene3d.biochem.ucl.ac.uk/Gene3D/
  PDB X X http://www.pdb.org/
  IntAct X X http://www.ebi.ac.uk/intact/
Homology InterPro X X http://www.ebi.ac.uk/interpro/
  PFam X   http://pfam.sanger.ac.uk/
  PRINTS X   http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS
  PROSITE X X http://www.expasy.ch/prosite/
  PANTHER X   http://www.pantherdb.org/
  ProDom X   http://prodom.prabi.fr/
Pathway Reactome X   http://www.reactome.org/
  KEGG Pathway X X http://www.kegg.jp/
  BioCyc X X http://www.biocyc.org/
Drug KEGG Drug X X http://www.kegg.jp/
  PharmGKB X X http://www.pharmgkb.org/
  DrugBank X   http://www.drugbank.ca/
Disease OMIM X   http://www.ncbi.nlm.nih.gov/omim/
  Orphanet X   http://www.orpha.net/
Enzyme EC X   http://www.biochem.ucl.ac.uk/bsm/dbbrowser/protocol/ecenzfrm.html
  Brenda X   http://www.brenda-enzymes.org/
Bibliography PubMed X X http://www.ncbi.nlm.nih.gov/pubmed/
Ontology Gene Ontology X   http://www.geneontology.org/