An automatic method for identifying surface proteins in bacteria: SLEP

BMC Bioinformatics

Table 2 SLEP overall accuracy

	Gram+ Total number of proteins: 9,564
	MEMBRANE	LIPOPROTEINS	EXPORTED	CELL WALL
TP	2057	227	279	118
FP	76	19	221	29
TN	7335	9313	8960	9396
FN	96	5	104	21
SE	95.5	97.8	72.8	84.9
SP	99.0	99.8	97.6	99.7
PPV	96.4	92.3	55.8	80.3
NPV	98.7	99.9	98.9	99.8
Accuracy	98.2	99.7	96.6	99.5
CCM	94.8	94.9	62.0	82.3
	Gram-. Total number of proteins: 9,946
	MEMBRANE	LIPOPROTEINS	EXPORTED	OUTER MEMBRANE
TP	2743	266	711	179
FP	57	40	224	46
TN	6971	9635	8831	9696
FN	175	5	180	25
SE	94.0	98.2	80.2	87.7
SP	99.2	99.6	97.5	99.5
PPV	98.0	86.9	75.9	79.6
NPV	97.6	99.9	98.1	99.7
Accuracy	97.7	99.5	96.0	99.3
CCM	94.3	92.1	75.8	83.2

Overall accuracy of SLEP for Gram+ and Gram- bacteria. See Material and Methods for the definition of the parameters.

ISSN: 1471-2105