Skip to main content

Table 3 Comparison between SLEP and other available tools

From: An automatic method for identifying surface proteins in bacteria: SLEP

 

Gram+

Gram-

 

SLEP

PSORTb

PHOBIUS

PRED-LIPO

SLEP

PSORTb

PHOBIUS

PRED-LIPO

ProfTMB

Membrane

98.6

91.8

  

97.8

92.7

   

Lipoproteins

99.8

98.5

 

99.4

99.6

98.4

 

98.9

 

Exported

96.6

97.8

93.8

 

95.7

94.9

90.5

  

Cell wall/Outer membrane

99.7

99.6

  

99.5

98.9

  

97.8

  1. Comparison of the accuracy of SLEP, PSORTb [31, 32], PHOBIUS [33–35], PRED-LIPO [36] and Prof-TMB [37, 38] on our dataset. For Prof-TMB, we only considered as positive proteins for which at least 14 transmembrane segments were predicted as this choice substantially increases the accuracy of the method.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us