Table 5 Phylum predictions according to S61 TSPs for the 22 species of Table 1
From: Deriving enzymatic and taxonomic signatures of metagenomes from short read data
Organism | Phylum | Precision |
|---|---|---|
Mycobacterium tuberculosis. | Actinobacteria | 96% |
Mycobacterium bovis. | Actinobacteria | 96% |
Sulfurihydrogenibium azorense | Aquificae | no prediction |
Aquifex aeolicus. | Aquificae | no prediction |
Cytophaga hutchinsonii | Bacteroidetes | 74% |
Gramella forsetii | Bacteroidetes | 74% |
Pelodictyon luteolum | Chlorobi | 91% |
Chlorobium chlorochromatii | Chlorobi | 95% |
Nostoc punctiforme | Cyanobacteria | 81% |
Anabaena variabilis | Cyanobacteria | 89% |
Synechocystis sp. | Cyanobacteria | 96% |
Bacillus cereus (strain ZK). | Firmicutes | 94% |
Bacillus cereus (strain ATCC 14579 ). | Firmicutes | 95% |
Pseudomonas aeruginosa. | Proteobacteria | 94% |
Rhizobium meliloti | Proteobacteria | 97% |
Salmonella typhimurium. | Proteobacteria | 99% |
Shigella flexneri. | Proteobacteria | 100% |
Salmonella typhi. | Proteobacteria | 100% |
Escherichia coli (K12). | Proteobacteria | 99% |
Caulobacter crescentus | Proteobacteria | 88% |
Leptospira biflexa serovar Patoc | Spirochaetes | 72% |
Thermotoga petrophila | Thermotogae | 91% |