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Table 1 Cross-validation prediction results for the IEDB data sets

From: Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model

MHC allele AUC RMS error
(kcal/mol)
Correlation coefficient Number of data
DRB1*0101 0.749 1.43 0.530 5648
DRB1*0301 0.762 1.46 0.425 837
DRB1*0401 0.715 1.72 0.340 1014
DRB1*0404 0.792 1.38 0.487 617
DRB1*0405 0.757 1.35 0.442 642
DRB1*0701 0.790 1.62 0.484 833
DRB1*0802 0.747 1.34 0.412 557
DRB1*0901 0.711 1.68 0.369 551
DRB1*1101 0.753 1.45 0.450 812
DRB1*1302 0.765 1.64 0.464 636
DRB1*1501 0.736 1.53 0.438 879
DRB3*0101 0.825 1.13 0.425 483
DRB4*0101 0.799 1.33 0.522 664
DRB5*0101 0.732 1.57 0.434 835
H2-IAb 0.828 1.15 0.556 526
H2-IAd 0.814 1.53 0.563 306