Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model

BMC Bioinformatics

Table 1 Cross-validation prediction results for the IEDB data sets

MHC allele	AUC	RMS error (kcal/mol)	Correlation coefficient	Number of data
DRB1*0101	0.749	1.43	0.530	5648
DRB1*0301	0.762	1.46	0.425	837
DRB1*0401	0.715	1.72	0.340	1014
DRB1*0404	0.792	1.38	0.487	617
DRB1*0405	0.757	1.35	0.442	642
DRB1*0701	0.790	1.62	0.484	833
DRB1*0802	0.747	1.34	0.412	557
DRB1*0901	0.711	1.68	0.369	551
DRB1*1101	0.753	1.45	0.450	812
DRB1*1302	0.765	1.64	0.464	636
DRB1*1501	0.736	1.53	0.438	879
DRB3*0101	0.825	1.13	0.425	483
DRB4*0101	0.799	1.33	0.522	664
DRB5*0101	0.732	1.57	0.434	835
H2-IA^b	0.828	1.15	0.556	526
H2-IA^d	0.814	1.53	0.563	306

ISSN: 1471-2105