PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci

BMC Bioinformatics

Table 3 Numbers and length distributions of subpeaks

Experimental signal peaks output by different methods and subdivided using PeakSplitter. Subpeaks generated with and without filtering based on a minimal height threshold of 5 are reported, along with subpeak length distribution. Peak subdivision was applied based on a .wig file produced from the raw aligned reads, as only MACS, FindPeaks and SWEMBL output adjusted .wig files. For these methods PeakSplitter was also run using the modified .wig data generated by the respective program.

ISSN: 1471-2105