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Table 2 Assigned feature weights by dimension

From: Ranked retrieval of Computational Biology models

Dimension

Feature

Weight

Constituents

  

(description)

modelName

4

 

species

3

 

compartment

3

 

reaction

3

 

parameter

1.5

 

event

1.5

 

function

1.5

 

modelDescription

0.5

(URI)

modelURI

5

 

speciesURI

5

 

compartmentURI

5

 

reactionURI

5

 

parameterURI

3

 

eventURI

3

 

functionURI

3

Persons

Author

4

 

Encoder

1

 

submitter

1

Publications

publicationURI

5

 

publicationText

2.5

 

content

1

User generated

  

Content

-

-

Dates

CreationDate

1

 

modificationDate

1

Administrative data

ID

1

 

additionalID

1

 

path

1

 

content

1

  1. Feature weights for the different model dimensions. Each dimension is further separated into the features it covers. For each feature, a concrete relevance value, i. e. weight, is given. For example, in the Constituents dimension, one important feature for the model description is the modelName. The different URIs (modelURI, speciesURI, compartmentURI and reactionURI) also play an important role in determining the ranking. A less influential feature is the modelDescription, as for example found in the SBML <notes> tag.
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BMC Bioinformatics

ISSN: 1471-2105

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