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Figure 2 | BMC Bioinformatics

Figure 2

From: TF-finder: A software package for identifying transcription factors involved in biological processes using microarray data and existing knowledge base

Figure 2

The workflow of TF-finder package. Automated package that can recognize transcription regulators controlling a biological process with three inputs: positive TFs, all TFs, and positive targets. ICE: Intersection of Coexpression (ICE) Analysis is integrated into this package for comparison. The package was developed with R, but is called from Perl in Unix /Linux environment. Pre-installation of Eisen's k-means cluster [45] is necessary for auto-clustering analysis.

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BMC Bioinformatics

ISSN: 1471-2105

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