From: rSW-seq: Algorithm for detection of copy number alterations in deep sequencing data
 | Ratio | Method | HCC1143 | HCC1954 | H2347 |
---|---|---|---|---|---|
Concordance rate (%)a | >1.5 | rSW-seq | 94.2 | 90.9 | 97.4 |
 |  | SegSeq | 83.6 | 79.7 | 99.5 |
 | <0.5 | rSW-seq | 93.0 | 97.1 | 98.6 |
 |  | SegSeq | 91.0 | 93.2 | 93.8 |
Concordance rate vs array-based profile (%)b | >1.5 | rSW-seq | 96.8 | 96.4 | 70.0 |
 |  | SegSeq | 95.4 | 94.6 | 26.3 |
 | <0.5 | rSW-seq | 83.9 | 57.2 | 42.4 |
 |  | SegSeq | 76.9 | 57.8 | 33.5 |