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Table 1 A list of T/Cs that induces the expression of the Arabidopsis PR-1 gene.

From: Gene Expression Browser: large-scale and cross-experiment microarray data integration, management, search & visualization

T/C Name

Treatment type

Fold Change

P-value

Seedling, SA treatment vs. control

Plant defense elicitor

338.61

0.0024

Csn5 (csn5a-2 csn5b) mutant, light vs. wild type, light

Plant defense related mutant

230.14

3.83E-05

gh3.5-1D mutant Pst DC3000(avrRpt2) vs. gh3.5-1D un-inoculated control

Pathogen infection

220.44

2.07E-06

Leaf, eds16 mutant, Golovinomyces orontii infection for 7 d vs. eds16 mutant, 0 d control

Pathogen infection

160.28

2.21E-05

Csn4-1 mutant, light vs. wild type, light

Plant defense related mutant

130.35

6.81E-04

Csn4-1 mutant vs. wild type

Plant defense related mutant

125.67

0.0011

BTH Effect for 24 hr in wrky18 mutant

Plant defense elicitor

111.62

0.0012

Whole plant, mkk1/mkk2 vs. WT

Plant defense elicitor

108.59

5.48E-04

senescence effects in pod

Senescence

97.64

2.67E-05

cpr5scv1 double mutant

Plant defense related mutant

88.61

0.0385

Pst DC3000 infection (12 hr) in WT

Pathogen infection

83.37

0.0181

BTH Effect for 24 hr in WT

Plant defense elicitor

77.47

0.012

Whole plant, WT, 24 h BTH vs. WT control

Plant defense elicitor

71.71

3.44E-07

Csn3-1 mutant, light vs. wild type, light

Plant defense related mutant

67.19

7.58E-05

120 hr Erysiphe orontii infection

Pathogen infection

64.8

0.0053

Whole plant, mkk2, 24 h BTH vs. mkk2 control

Plant defense elicitor

63.45

0.0042

Col-0 WT, Pst DC3000 (avrRpt2) infection vs. un-inoculated control

Pathogen infection

60.32

0.0182

Cold 7 days effects

Others

58.93

0.0061

cpr5 mutant

Plant defense related mutant

56.63

0.0354

Pst DC3000 infection (12 hr) in wrky17 mutant

Pathogen infection

55.62

0.0293

siz1-3 mutant drought with treatment vs. Col-0 WT with drought treatment

Plant defense related mutant

52.98

0.0034

Brm-101 mutant vs. Ler WT

Others

52.5

0.0221

96 hr Erysiphe orontii infection

Pathogen infection

49.32

2.50E-05

Phytophthora infection for 24 hr

Pathogen infection

47.65

3.19E-05

32 hr PsES4326 infection vs 9 hr PsES4326 infection

Pathogen infection

41.11

0.0267

siz1-3 mutant vs. Col-0 WT

Plant defense related mutant

38.88

0.0031

Pst DC3000 infection (12 hr) in wrky11 mutant

Pathogen infection

37.07

0.0093

24 hr PsES4326 infection vs 9 hr PsES4326 infection

Pathogen infection

33.64

0.0297

E2Fa-DPa over-expressing

Others

32.75

0.009

Cotyledon

Others

30.2

8.69E-05

Chitin receptor mutant, chitooctaose treatment vs. Wild type, chitooctaose treatment

Plant defense elicitor

29.64

7.04E-04

shoot vs root

Others

29.61

8.02E-04

Csn5 (csn5a-2 csn5b) mutant, dark vs. wild type, dark

Plant defense related mutant

29.26

0.007

Chitin receptor mutant vs. Wild type

Plant defense related mutant

28.92

3.09E-05

flower stage 15, sepals

Others

28.05

1.08E-04

Whole plant, mkk1, 24 h BTH vs. mkk1 control

Plant defense elicitor

26.74

0.0174

Leaf, WT, Golovinomyces orontii infection for 7 d vs. 0 d control

Pathogen infection

26.06

2.36E-07

BTH Effect for 8 hr in WT

Plant defense elicitor

26.06

0.0201

BTH Effect for 8 hr in wrky18 mutant

Plant defense elicitor

25.92

3.30E-04

camta3-2 mutant vs. wild type

Plant defense related mutant

22.87

0.0358

cdpk6-yfp 4 transgene effects

Others

20.98

0.0151

PsmES4326 infection for 32 hr

Pathogen infection

19.53

0.0079

Leaf, WT, Golovinomyces orontii infection for 5 d vs. 0 d control

Pathogen infection

17.73

2.80E-06

S15-118 mutant vs. WT

Others

17.6

0.0368

PsmES4326 infection for 24 hr

Pathogen infection

16.37

0.0072

flower stage 15

Others

14.82

1.09E-04

BTH treatment in WT vs. WT control

Plant defense elicitor

14.78

3.70E-04

Pseudomonas syringae pv phaseolicola infiltration for 24 hr

Pathogen infection

12.87

0.0015

mature leaves, 35 days after sowing vs. Average

Others

12.58

0.0232

72 hr Erysiphe orontii infection

Pathogen infection

12.55

0.0086

old rosette leaf vs young rosettet leaf in WT

Senescence

10.82

0.0235

SPH1 knockout vs WT in young rosette leaf

Others

10.69

0.0187

pmr5 pmr6 double mutant vs. WT

Plant defense related mutant

10.46

0.0293

Pseudomonas syringae pv tomato avrRpm1 infiltration for 24 hr

Pathogen infection

10.19

0.0036

flower stage 12 equivalent (7)

Others

8.83

3.61E-04

sni1 mutant

Others

8.59

0.0117

flower stage 12 equivalent (6)

Others

8.58

2.48E-04

High nitrogen and glucose effects

Others

7.64

0.0015

Pnp1-1, phosphate deficiency 1 wk vs. WT, phostphate deficiency 1 wk

Others

6.92

0.0259

Pseudomonas syringae pv tomato DC3000 hrcC-infiltration for 24 hr

Pathogen infection

6.78

1.75E-04

glucose effects

Others

6.42

7.38E-04

Pnp1-1, phosphate efficiency 1 wk vs. WT, phostphate efficiency 1 wk

Others

6.36

0.0173

mil4 overexpression line with BTH treatment vs. mil4 overexpression line control

Plant defense elicitor

6.3

5.77E-04

flower stage 12, sepals

Others

6.2

3.95E-04

arr10 arr12 double null mutant effects under cytokinin

Others

6.03

0.0034

pmr5 mutant vs. WT

Plant defense related mutant

5.88

0.0412

WT, INA 48 h vs. control 48 h

Others

5.77

0.0437

pnp1-1 mutant, phosphate starvation for 1 wk vs. pnp1-1 mutant, 1 wk control

Others

5.74

0.0402

BTH treatment in mil4 mutant vs. H2O in mil4 mutant

Plant defense elicitor

5.52

0.0028

Cotyledon

Others

5.46

3.86E-04

WT, phosphate starvation for 1 wk vs. 1 wk control

Others

5.28

0.0166

seedling 3 vs average

Others

5.1

8.30E-04

seedling 2 vs average

Others

4.87

0.001

SAM SE, 35S:AGL15 vs. WT

Others

4.64

0.0461

16 hr Pseudomonas infection

Pathogen infection

4.58

0.0114

gl1T rosette leaf #4, 1 cm long

Others

4.53

1.56E-04

Pseudomonas syringae pv phaseolicola infiltration for 6 hr

Pathogen infection

4.33

0.0308

senescing leaves

Senescence

4.32

3.95E-05

Botrytis cinerea infection on 48 hpi leaf

Pathogen infection

4.17

0.0247

Col-0 rosette leaf #4

Others

4.08

0.0016

mil4 mutant vs. WT

Plant defense related mutant

3.81

0.0031

gl1T rosette leaf #12

Others

3.64

3.24E-04

flower stage 12 equivalent (5)

Others

3.62

0.0028

Leaf

Others

3.22

0.0016

cauline leaves

Others

3.13

0.0023

shoot under potassium starvation

Others

3

0.0098

Met1-3 mutant leaf (4th generation) vs. Col-0 WT

Others

2.9

0.0353

shoot under Caesium treatment

Others

2.9

0.0061

Col-0 rosette leaf #4

Others

2.76

0.0018

24 hr control vs 0 hr control

Others

2.7

0.0158

Ambient CO2 and Ambient Light at 96 hr vs 0 hr

Others

2.49

0.0364

rosette leaf # 2

Others

2.45

0.0075

leaf 7, distal half

Others

2.42

0.0023

HSP90 reduced mutant (RNAi-B1) vs. Control-3

Others

2.05

0.0063

gh3.5-1D mutant, Pst DC3000 (avrRpt2) infection vs. Col-0 WT, Pst DC3000 (avrRpt2) infection

Others

2.03

0.0263