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Table 3 The test results with HCV nucleotide sequences

From: A classification approach for genotyping viral sequences based on multidimensional scaling and linear discriminant analysis

Class

All

Outlierness < 2.0

No. of reference sequences

 

Total

% acc.*

Total

% acc.*

 

(a) by gene segment

arfp

4,333

99.7

4,167

99.78

289

core

4,453

99.73

4,412

99.77

463

e1

19,353

95.19

19,167

95.15

456

e2

16,025

93.32

15,462

93.27

194

p7

2,156

100

2,120

100

195

ns2

813

100

785

100

166

ns3

3,254

99.97

3,125

99.97

154

ns4a

950

99.58

796

99.75

253

ns4b

921

99.67

787

99.62

148

ns5a

5,870

99.98

5,794

99.98

298

ns5b

5,115

98.14

4,384

98.02

148

okamoto

3,245

97.13

3,240

97.13

2,203

(b) by genotype

1

49,574

99.15

49,462

99.19

1,709

2

3,544

98.87

3,452

98.99

354

3

6,043

99.7

5,810

99.76

473

4

4,026

66.57

2,875

53.25

346

5

1,182

66.75

641

40.72

72

6

2,119

99.76

1,999

99.9

139

Total

66,488

96.66

64,239

96.61

3,093

  1. *% accuracy given as 100 × Matched/Total, where Matched is the number cases concordant between MuLDAS and LANL