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Table 2 Total-Column score of ClustalW with anchor points on Balibase 3, compared to other usual aligners

From: Automatic detection of anchor points for multiple sequence alignment

Alignment

RV11

RV12

RV20

RV30

RV40

RV50

CLUSTALW 2.0

24.00

72.32

20.44

26.87

40.04

34.21

CW+pc. (2)

13.48

62.48

16.15

19.41

29.21

27.14

CW+pc. (6)

21.34

74.95

24.18

27.01

39.07

41.67

CW+pc. (12)

17.33

66.36

24.96

28.69

33.01

31.71

CW+c. pc. (2)

25.89

70.42

26.18

30.24

37.28

40.06

CW+c. pc. (6)

21.34

75.59

26.18

29.65

37.34

38.56

CW+c. pc. (12)

17.33

66.36

25.25

27.27

32.92

31.71

DIALIGN-TX

26.81

75.69

30.78

38.90

45.17

47.05

MAFFT 6.717b

44.13

83.83

45.46

58.90

60.56

59.52

MUSCLE 3.7

32.06

80.90

35.30

41.19

45.32

46.39

PROBCONS 1.12

41.96

86.05

41.15

54.73

53.61

57.89

T-COFFEE 7.81

42.65

85.71

39.21

49.99

56.30

59.11

  1. Same comments as in Table 1.