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Table 2 Total-Column score of ClustalW with anchor points on Balibase 3, compared to other usual aligners

From: Automatic detection of anchor points for multiple sequence alignment

Alignment RV11 RV12 RV20 RV30 RV40 RV50
CLUSTALW 2.0 24.00 72.32 20.44 26.87 40.04 34.21
CW+pc. (2) 13.48 62.48 16.15 19.41 29.21 27.14
CW+pc. (6) 21.34 74.95 24.18 27.01 39.07 41.67
CW+pc. (12) 17.33 66.36 24.96 28.69 33.01 31.71
CW+c. pc. (2) 25.89 70.42 26.18 30.24 37.28 40.06
CW+c. pc. (6) 21.34 75.59 26.18 29.65 37.34 38.56
CW+c. pc. (12) 17.33 66.36 25.25 27.27 32.92 31.71
DIALIGN-TX 26.81 75.69 30.78 38.90 45.17 47.05
MAFFT 6.717b 44.13 83.83 45.46 58.90 60.56 59.52
MUSCLE 3.7 32.06 80.90 35.30 41.19 45.32 46.39
PROBCONS 1.12 41.96 86.05 41.15 54.73 53.61 57.89
T-COFFEE 7.81 42.65 85.71 39.21 49.99 56.30 59.11
  1. Same comments as in Table 1.