From: Fast and accurate protein substructure searching with simulated annealing and GPUs
 |  |  |  |  |  | 95% confidence interval | |
---|---|---|---|---|---|---|---|
Method | Platform | Restarts | Elapsed time | AUC | Standard error | lower | upper |
SHEBA | CPU | - | 25 h 22 m | 0.931 | 0.004 | 0.924 | 0.938 |
SA Tableau Search | CPU | 4096 | 142 h 42 m | 0.930 | 0.004 | 0.923 | 0.937 |
SA Tableau Search | GTX 285 | 4096 | 4 h 11 m | 0.930 | 0.004 | 0.923 | 0.937 |
SA Tableau Search | Tesla C1060 | 4096 | 5 h 40 m | 0.930 | 0.004 | 0.923 | 0.937 |
SA Tableau Search | CPU | 128 | 4 h 18 m | 0.921 | 0.004 | 0.913 | 0.929 |
SA Tableau Search | GTX 285 | 128 | 0 h 08 m | 0.920 | 0.004 | 0.912 | 0.927 |
SA Tableau Search | Tesla C1060 | 128 | 0 h 11 m | 0.920 | 0.004 | 0.912 | 0.927 |
QP Tableau Search | CPU | - | 157 h 51 m | 0.914 | 0.004 | 0.906 | 0.922 |
LOCK2 | CPU | - | 208 h 09 m | 0.912 | 0.004 | 0.904 | 0.920 |
TableauSearch | CPU | - | 1 h 11 m | 0.858 | 0.005 | 0.848 | 0.867 |
TOPS | CPU | - | 1 h 11 m | 0.855 | 0.005 | 0.845 | 0.864 |
VAST | CPU | - | 14 h 26 m | 0.855 | 0.005 | 0.846 | 0.865 |
IR Tableau | CPU | - | 0 h 01 m | 0.854 | 0.005 | 0.844 | 0.864 |
YAKUSA | CPU | - | 4 h 14 m | 0.827 | 0.005 | 0.816 | 0.837 |