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Table 4 ΔAUC relative to SA Tableau Search in the Fischer data set.

From: Fast and accurate protein substructure searching with simulated annealing and GPUs

Method(s) ΔAUC
QP Tableau Search -0.0533
SHEBA -0.0409
DaliLite -0.0399
LOCK2 -0.0379
SA Tableau Search 4096, IR Tableau 0.000
SA Tableau Search 1024 0.0055
SA Tableau Search 128 0.0143
SARF2 0.0398
YAKUSA 0.0954
TOPS 0.1449
TableauSearch 0.1744
VAST 0.2365
  1. Difference in AUC relative to SA Tableau Search (4096 restarts) methods for all-against-all comparisons in the Fischer data set. The table is sorted by ΔAUC, so that methods with higher AUC than SA TableauSearch (ΔAUC < 0, with p-value < 0.05) are at the top of the table, and those with lower AUC than SA tableau search (ΔAUC > 0, with p-value < 0.05) are at the bottom of the table. Methods for which there is no statistically significant difference in AUC from SA Tableau Search (4096 restarts) at p-value 0.05 are shown in a single row with ΔAUC = 0.000.
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BMC Bioinformatics

ISSN: 1471-2105

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