Skip to main content

Table 6 ΔAUC relative to SA Tableau Search in the COPS benchmark data set.

From: Fast and accurate protein substructure searching with simulated annealing and GPUs

Method(s) ΔAUC
DaliLite - 0.0349
SHEBA - 0.0201
YAKUSA - 0.0180
SARF2 - 0.0140
SA Tableau Search 4096, VAST, LOCK2 0.000
SA Tableau Search 128 0.0064
QP Tableau Search 0.0325
TOPS 0.0764
IR Tableau 0.1120
TableauSearch 0.1172
  1. Difference in AUC relative to SA Tableau Search (4096 restarts) methods on the COPS benchmark data set. The table is sorted by ΔAUC, so that methods with higher AUC than SA Tableau Search (ΔAUC < 0, with p-value < 0.05) are at the top of the table, and those with lower AUC than SA tableau search (ΔAUC > 0, with p-value < 0.05) are at the bottom of the table. Methods for which there is no statistically significant difference in AUC from SA Tableau Search (4096 restarts) at p-value 0.05 are shown in a single row with ΔAUC = 0.000.